cfs-coffee.c

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/*
 * Copyright (c) 2008, 2009, Swedish Institute of Computer Science
 * All rights reserved.
 *
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions
 * are met:
 * 1. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 * 2. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the distribution.
 * 3. Neither the name of the Institute nor the names of its contributors
 *    may be used to endorse or promote products derived from this software
 *    without specific prior written permission.
 *
 * THIS SOFTWARE IS PROVIDED BY THE INSTITUTE AND CONTRIBUTORS ``AS IS'' AND
 * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 * ARE DISCLAIMED.  IN NO EVENT SHALL THE INSTITUTE OR CONTRIBUTORS BE LIABLE
 * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
 * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
 * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
 * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
 * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
 * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
 * SUCH DAMAGE.
 *
 * This file is part of the Contiki operating system.
 *
 */

/**
 * \file
 *      Coffee: A file system for a variety of storage types in
 *              memory-constrained devices.
 *
 *      For further information, see "Enabling Large-Scale Storage in 
 *      Sensor Networks with the Coffee File System" in the proceedings 
 *      of ACM/IEEE IPSN 2009.
 *
 * \author
 *      Nicolas Tsiftes <nvt@sics.se>
 */

#include <limits.h>
#include <string.h>

#define DEBUG 0
#if DEBUG
#include <stdio.h>
#define PRINTF(...) printf(__VA_ARGS__)
#else
#define PRINTF(...)
#endif

#include "contiki-conf.h"
#include "cfs/cfs.h"
#include "cfs-coffee-arch.h"
#include "cfs/cfs-coffee.h"

/* Micro logs enable modifications on storage types that do not support
   in-place updates. This applies primarily to flash memories. */
#ifndef COFFEE_MICRO_LOGS
#define COFFEE_MICRO_LOGS       1
#endif

/* If the files are expected to be appended to only, this parameter 
   can be set to save some code space. */
#ifndef COFFEE_APPEND_ONLY
#define COFFEE_APPEND_ONLY      0
#endif

#if COFFEE_MICRO_LOGS && COFFEE_APPEND_ONLY
#error "Cannot have COFFEE_APPEND_ONLY set when COFFEE_MICRO_LOGS is set."
#endif

/* I/O semantics can be set on file descriptors in order to optimize 
   file access on certain storage types. */
#ifndef COFFEE_IO_SEMANTICS
#define COFFEE_IO_SEMANTICS     0
#endif

/*
 * Prevent sectors from being erased directly after file removal.
 * This will level the wear across sectors better, but may lead
 * to longer garbage collection procedures.
 */
#ifndef COFFEE_EXTENDED_WEAR_LEVELLING
#define COFFEE_EXTENDED_WEAR_LEVELLING  1
#endif

#if COFFEE_START & (COFFEE_SECTOR_SIZE - 1)
#error COFFEE_START must point to the first byte in a sector.
#endif

#define COFFEE_FD_FREE          0x0
#define COFFEE_FD_READ          0x1
#define COFFEE_FD_WRITE         0x2
#define COFFEE_FD_APPEND        0x4

#define COFFEE_FILE_MODIFIED    0x1

#define INVALID_PAGE            ((coffee_page_t)-1)
#define UNKNOWN_OFFSET          ((cfs_offset_t)-1)

#define REMOVE_LOG              1
#define CLOSE_FDS               1
#define ALLOW_GC                1

/* "Greedy" garbage collection erases as many sectors as possible. */
#define GC_GREEDY               0
/* "Reluctant" garbage collection stops after erasing one sector. */
#define GC_RELUCTANT            1

/* File descriptor macros. */
#define FD_VALID(fd)                                    \
        ((fd) >= 0 && (fd) < COFFEE_FD_SET_SIZE &&      \
        coffee_fd_set[(fd)].flags != COFFEE_FD_FREE)
#define FD_READABLE(fd)         (coffee_fd_set[(fd)].flags & CFS_READ)
#define FD_WRITABLE(fd)         (coffee_fd_set[(fd)].flags & CFS_WRITE)
#define FD_APPENDABLE(fd)       (coffee_fd_set[(fd)].flags & CFS_APPEND)

/* File object macros. */
#define FILE_MODIFIED(file)     ((file)->flags & COFFEE_FILE_MODIFIED)
#define FILE_FREE(file)         ((file)->max_pages == 0)
#define FILE_UNREFERENCED(file) ((file)->references == 0)

/* File header flags. */
#define HDR_FLAG_VALID          0x1     /* Completely written header. */
#define HDR_FLAG_ALLOCATED      0x2     /* Allocated file. */
#define HDR_FLAG_OBSOLETE       0x4     /* File marked for GC. */
#define HDR_FLAG_MODIFIED       0x8     /* Modified file, log exists. */
#define HDR_FLAG_LOG            0x10    /* Log file. */
#define HDR_FLAG_ISOLATED       0x20    /* Isolated page. */

/* File header macros. */
#define CHECK_FLAG(hdr, flag)   ((hdr).flags & (flag))
#define HDR_VALID(hdr)          CHECK_FLAG(hdr, HDR_FLAG_VALID)
#define HDR_ALLOCATED(hdr)      CHECK_FLAG(hdr, HDR_FLAG_ALLOCATED)
#define HDR_FREE(hdr)           !HDR_ALLOCATED(hdr)
#define HDR_LOG(hdr)            CHECK_FLAG(hdr, HDR_FLAG_LOG)
#define HDR_MODIFIED(hdr)       CHECK_FLAG(hdr, HDR_FLAG_MODIFIED)
#define HDR_ISOLATED(hdr)       CHECK_FLAG(hdr, HDR_FLAG_ISOLATED)
#define HDR_OBSOLETE(hdr)       CHECK_FLAG(hdr, HDR_FLAG_OBSOLETE)
#define HDR_ACTIVE(hdr)         (HDR_ALLOCATED(hdr) && \
                                !HDR_OBSOLETE(hdr)  && \
                                !HDR_ISOLATED(hdr))

/* Shortcuts derived from the hardware-dependent configuration of Coffee. */
#define COFFEE_SECTOR_COUNT     (unsigned)(COFFEE_SIZE / COFFEE_SECTOR_SIZE)
#define COFFEE_PAGE_COUNT       \
        ((coffee_page_t)(COFFEE_SIZE / COFFEE_PAGE_SIZE))
#define COFFEE_PAGES_PER_SECTOR \
        ((coffee_page_t)(COFFEE_SECTOR_SIZE / COFFEE_PAGE_SIZE))

/* This structure is used for garbage collection statistics. */
struct sector_status {
  coffee_page_t active;
  coffee_page_t obsolete;
  coffee_page_t free;
};

/* The structure of cached file objects. */
struct file {
  cfs_offset_t end;
  coffee_page_t page;
  coffee_page_t max_pages;
  int16_t record_count;
  uint8_t references;
  uint8_t flags;
};

/* The file descriptor structure. */
struct file_desc {
  cfs_offset_t offset;
  struct file *file;
  uint8_t flags;
#if COFFEE_IO_SEMANTICS
  uint8_t io_flags;
#endif
};

/* The file header structure mimics the representation of file headers 
   in the physical storage medium. */
struct file_header {
  coffee_page_t log_page;
  uint16_t log_records;
  uint16_t log_record_size;
  coffee_page_t max_pages;
  uint8_t deprecated_eof_hint;
  uint8_t flags;
  char name[COFFEE_NAME_LENGTH];
};

/* This is needed because of a buggy compiler. */
struct log_param {
  cfs_offset_t offset;
  const char *buf;
  uint16_t size;
};

/*
 * The protected memory consists of structures that should not be 
 * overwritten during system checkpointing because they may be used by 
 * the checkpointing implementation. These structures need not be 
 * protected if checkpointing is not used.
 */
static struct protected_mem_t {
  struct file coffee_files[COFFEE_MAX_OPEN_FILES];
  struct file_desc coffee_fd_set[COFFEE_FD_SET_SIZE];
  coffee_page_t next_free;
  char gc_wait;
} protected_mem;
static struct file * const coffee_files = protected_mem.coffee_files;
static struct file_desc * const coffee_fd_set = protected_mem.coffee_fd_set;
static coffee_page_t * const next_free = &protected_mem.next_free;
static char * const gc_wait = &protected_mem.gc_wait;

/*---------------------------------------------------------------------------*/
static void
write_header(struct file_header *hdr, coffee_page_t page)
{
  hdr->flags |= HDR_FLAG_VALID;
  COFFEE_WRITE(hdr, sizeof(*hdr), page * COFFEE_PAGE_SIZE);
}
/*---------------------------------------------------------------------------*/
static void
read_header(struct file_header *hdr, coffee_page_t page)
{
  COFFEE_READ(hdr, sizeof(*hdr), page * COFFEE_PAGE_SIZE);
#if DEBUG
  if(HDR_ACTIVE(*hdr) && !HDR_VALID(*hdr)) {
    PRINTF("Invalid header at page %u!\n", (unsigned)page);
  }
#endif
}
/*---------------------------------------------------------------------------*/
static cfs_offset_t
absolute_offset(coffee_page_t page, cfs_offset_t offset)
{
  return page * COFFEE_PAGE_SIZE + sizeof(struct file_header) + offset;
}
/*---------------------------------------------------------------------------*/
static coffee_page_t
get_sector_status(uint16_t sector, struct sector_status *stats)
{
  static coffee_page_t skip_pages;
  static char last_pages_are_active;
  struct file_header hdr;
  coffee_page_t active, obsolete, free;
  coffee_page_t sector_start, sector_end;
  coffee_page_t page;

  memset(stats, 0, sizeof(*stats));
  active = obsolete = free = 0;

  /*
   * get_sector_status() is an iterative function using local static 
   * state. It therefore requires the the caller loops starts from 
   * sector 0 in order to reset the internal state.
   */
  if(sector == 0) {
    skip_pages = 0;
    last_pages_are_active = 0;
  }

  sector_start = sector * COFFEE_PAGES_PER_SECTOR;
  sector_end = sector_start + COFFEE_PAGES_PER_SECTOR;

  /*
   * Account for pages belonging to a file starting in a previous 
   * segment that extends into this segment. If the whole segment is 
   * covered, we do not need to continue counting pages in this iteration.
   */
  if(last_pages_are_active) {
    if(skip_pages >= COFFEE_PAGES_PER_SECTOR) {
      stats->active = COFFEE_PAGES_PER_SECTOR;
      skip_pages -= COFFEE_PAGES_PER_SECTOR;
      return 0;
    }
    active = skip_pages;
  } else {
    if(skip_pages >= COFFEE_PAGES_PER_SECTOR) {
      stats->obsolete = COFFEE_PAGES_PER_SECTOR;
      skip_pages -= COFFEE_PAGES_PER_SECTOR;
      return skip_pages >= COFFEE_PAGES_PER_SECTOR ? 0 : skip_pages;
    }
    obsolete = skip_pages;
  }

  /* Determine the amount of pages of each type that have not been 
     accounted for yet in the current sector. */
  for(page = sector_start + skip_pages; page < sector_end;) {
    read_header(&hdr, page);
    last_pages_are_active = 0;
    if(HDR_ACTIVE(hdr)) {
      last_pages_are_active = 1;
      page += hdr.max_pages;
      active += hdr.max_pages;
    } else if(HDR_ISOLATED(hdr)) {
      page++;
      obsolete++;
    } else if(HDR_OBSOLETE(hdr)) {
      page += hdr.max_pages;
      obsolete += hdr.max_pages;
    } else {
      free = sector_end - page;
      break;
    }
  }

  /*
   * Determine the amount of pages in the following sectors that
   * should be remembered for the next iteration. This is necessary 
   * because no page except the first of a file contains information 
   * about what type of page it is. A side effect of remembering this
   * amount is that there is no need to read in the headers of each 
   * of these pages from the storage.
   */
  skip_pages = active + obsolete + free - COFFEE_PAGES_PER_SECTOR;
  if(skip_pages > 0) {
    if(last_pages_are_active) {
      active = COFFEE_PAGES_PER_SECTOR - obsolete;
    } else {
      obsolete = COFFEE_PAGES_PER_SECTOR - active;
    }
  }

  stats->active = active;
  stats->obsolete = obsolete;
  stats->free = free;

  /*
   * To avoid unnecessary page isolation, we notify the callee that 
   * "skip_pages" pages should be isolated only if the current file extent 
   * ends in the next sector. If the file extent ends in a more distant 
   * sector, however, the garbage collection can free the next sector 
   * immediately without requiring page isolation. 
   */
  return (last_pages_are_active || (skip_pages >= COFFEE_PAGES_PER_SECTOR)) ?
        0 : skip_pages;
}
/*---------------------------------------------------------------------------*/
static void
isolate_pages(coffee_page_t start, coffee_page_t skip_pages)
{
  struct file_header hdr;
  coffee_page_t page;

  /* Split an obsolete file starting in the previous sector and mark
     the following pages as isolated. */
  memset(&hdr, 0, sizeof(hdr));
  hdr.flags = HDR_FLAG_ALLOCATED | HDR_FLAG_ISOLATED;

  /* Isolation starts from the next sector. */
  for(page = 0; page < skip_pages; page++) {
    write_header(&hdr, start + page);
  }
  PRINTF("Coffee: Isolated %u pages starting in sector %d\n",
         (unsigned)skip_pages, (int)start / COFFEE_PAGES_PER_SECTOR);

}
/*---------------------------------------------------------------------------*/
static void
collect_garbage(int mode)
{
  uint16_t sector;
  struct sector_status stats;
  coffee_page_t first_page, isolation_count;

  PRINTF("Coffee: Running the file system garbage collector in %s mode\n",
         mode == GC_RELUCTANT ? "reluctant" : "greedy");
  /*
   * The garbage collector erases as many sectors as possible. A sector is
   * erasable if there are only free or obsolete pages in it.
   */
  for(sector = 0; sector < COFFEE_SECTOR_COUNT; sector++) {
    isolation_count = get_sector_status(sector, &stats);
    PRINTF("Coffee: Sector %u has %u active, %u obsolete, and %u free pages.\n",
        sector, (unsigned)stats.active,
        (unsigned)stats.obsolete, (unsigned)stats.free);

    if(stats.active > 0) {
      continue;
    }

    if((mode == GC_RELUCTANT && stats.free == 0) ||
       (mode == GC_GREEDY && stats.obsolete > 0)) {
      first_page = sector * COFFEE_PAGES_PER_SECTOR;
      if(first_page < *next_free) {
        *next_free = first_page;
      }

      if(isolation_count > 0) {
        isolate_pages(first_page + COFFEE_PAGES_PER_SECTOR, isolation_count);
      }

      COFFEE_ERASE(sector);
      PRINTF("Coffee: Erased sector %d!\n", sector);

      if(mode == GC_RELUCTANT && isolation_count > 0) {
        break;
      }
    }
  }
}
/*---------------------------------------------------------------------------*/
static coffee_page_t
next_file(coffee_page_t page, struct file_header *hdr)
{
  /*
   * The quick-skip algorithm for finding file extents is the most 
   * essential part of Coffee. The file allocation rules enables this 
   * algorithm to quickly jump over free areas and allocated extents 
   * after reading single headers and determining their status.
   *
   * The worst-case performance occurs when we encounter multiple long 
   * sequences of isolated pages, but such sequences are uncommon and 
   * always shorter than a sector.
   */
  if(HDR_FREE(*hdr)) {
    return (page + COFFEE_PAGES_PER_SECTOR) & ~(COFFEE_PAGES_PER_SECTOR - 1);
  } else if(HDR_ISOLATED(*hdr)) {
    return page + 1;
  }
  return page + hdr->max_pages;    
}
/*---------------------------------------------------------------------------*/
static struct file *
load_file(coffee_page_t start, struct file_header *hdr)
{
  int i, unreferenced, free;
  struct file *file;

  /*
   * We prefer to overwrite a free slot since unreferenced ones
   * contain usable data. Free slots are designated by the page
   * value INVALID_PAGE.
   */
  for(i = 0, unreferenced = free = -1; i < COFFEE_MAX_OPEN_FILES; i++) {
    if(FILE_FREE(&coffee_files[i])) {
      free = i;
      break;
    } else if(FILE_UNREFERENCED(&coffee_files[i])) {
      unreferenced = i;
    }
  }

  if(free == -1) {
    if(unreferenced != -1) {
      i = unreferenced;
    } else {
      return NULL;
    }
  }

  file = &coffee_files[i];
  file->page = start;
  file->end = UNKNOWN_OFFSET;
  file->max_pages = hdr->max_pages;
  file->flags = 0;
  if(HDR_MODIFIED(*hdr)) {
    file->flags |= COFFEE_FILE_MODIFIED;
  }
  /* We don't know the amount of records yet. */
  file->record_count = -1;

  return file;
}
/*---------------------------------------------------------------------------*/
static struct file *
find_file(const char *name)
{
  int i;
  struct file_header hdr;
  coffee_page_t page;
  
  /* First check if the file metadata is cached. */
  for(i = 0; i < COFFEE_MAX_OPEN_FILES; i++) {
    if(FILE_FREE(&coffee_files[i])) {
      continue;
    }

    read_header(&hdr, coffee_files[i].page);
    if(HDR_ACTIVE(hdr) && !HDR_LOG(hdr) && strcmp(name, hdr.name) == 0) {
      return &coffee_files[i];
    }
  }
  
  /* Scan the flash memory sequentially otherwise. */
  for(page = 0; page < COFFEE_PAGE_COUNT; page = next_file(page, &hdr)) {
    read_header(&hdr, page);
    if(HDR_ACTIVE(hdr) && !HDR_LOG(hdr) && strcmp(name, hdr.name) == 0) {
      return load_file(page, &hdr);
    }
  }

  return NULL;
}
/*---------------------------------------------------------------------------*/
static cfs_offset_t
file_end(coffee_page_t start)
{
  struct file_header hdr;
  unsigned char buf[COFFEE_PAGE_SIZE];
  coffee_page_t page;
  int i;

  read_header(&hdr, start);

  /*
   * Move from the end of the range towards the beginning and look for
   * a byte that has been modified.
   *
   * An important implication of this is that if the last written bytes
   * are zeroes, then these are skipped from the calculation.
   */

  for(page = hdr.max_pages - 1; page >= 0; page--) {
    COFFEE_READ(buf, sizeof(buf), (start + page) * COFFEE_PAGE_SIZE);
    for(i = COFFEE_PAGE_SIZE - 1; i >= 0; i--) {
      if(buf[i] != 0) {
        if(page == 0 && i < sizeof(hdr)) {
          return 0;
        }
        return 1 + i + (page * COFFEE_PAGE_SIZE) - sizeof(hdr);
      }
    }
  }

  /* All bytes are writable. */
  return 0;
}
/*---------------------------------------------------------------------------*/
static coffee_page_t
find_contiguous_pages(coffee_page_t amount)
{
  coffee_page_t page, start;
  struct file_header hdr;

  start = INVALID_PAGE;
  for(page = *next_free; page < COFFEE_PAGE_COUNT;) {
    read_header(&hdr, page);
    if(HDR_FREE(hdr)) {
      if(start == INVALID_PAGE) {
        start = page;
        if(start + amount >= COFFEE_PAGE_COUNT) {
          /* We can stop immediately if the remaining pages are not enough. */
          break;
        }
      }

      /* All remaining pages in this sector are free --
         jump to the next sector. */
      page = next_file(page, &hdr);

      if(start + amount <= page) {
        if(start == *next_free) {
          *next_free = start + amount;
        }
        return start;
      }
    } else {
      start = INVALID_PAGE;
      page = next_file(page, &hdr);
    }
  }
  return INVALID_PAGE;
}
/*---------------------------------------------------------------------------*/
static int
remove_by_page(coffee_page_t page, int remove_log, int close_fds,
               int gc_allowed)
{
  struct file_header hdr;
  int i;

  read_header(&hdr, page);
  if(!HDR_ACTIVE(hdr)) {
    return -1;
  }

  if(remove_log && HDR_MODIFIED(hdr)) {
    if(remove_by_page(hdr.log_page, !REMOVE_LOG, !CLOSE_FDS, !ALLOW_GC) < 0) {
      return -1;
    }
  }

  hdr.flags |= HDR_FLAG_OBSOLETE;
  write_header(&hdr, page);

  *gc_wait = 0;

  /* Close all file descriptors that reference the removed file. */
  if(close_fds) {
    for(i = 0; i < COFFEE_FD_SET_SIZE; i++) {
      if(coffee_fd_set[i].file != NULL && coffee_fd_set[i].file->page == page) {
        coffee_fd_set[i].flags = COFFEE_FD_FREE;
      }
    }
  }

  for(i = 0; i < COFFEE_MAX_OPEN_FILES; i++) {
    if(coffee_files[i].page == page) {
      coffee_files[i].page = INVALID_PAGE;
      coffee_files[i].references = 0;
      coffee_files[i].max_pages = 0;
    }
  }

#if !COFFEE_EXTENDED_WEAR_LEVELLING
  if(gc_allowed) {
    collect_garbage(GC_RELUCTANT);
  }
#endif

  return 0;
}
/*---------------------------------------------------------------------------*/
static coffee_page_t
page_count(cfs_offset_t size)
{
  return (size + sizeof(struct file_header) + COFFEE_PAGE_SIZE - 1) /
                COFFEE_PAGE_SIZE;
}
/*---------------------------------------------------------------------------*/
static struct file *
reserve(const char *name, coffee_page_t pages,
        int allow_duplicates, unsigned flags)
{
  struct file_header hdr;
  coffee_page_t page;
  struct file *file;

  if(!allow_duplicates && find_file(name) != NULL) {
    return NULL;
  }

  page = find_contiguous_pages(pages);
  if(page == INVALID_PAGE) {
    if(*gc_wait) {
      return NULL;
    }
    collect_garbage(GC_GREEDY);
    page = find_contiguous_pages(pages);
    if(page == INVALID_PAGE) {
      *gc_wait = 1;
      return NULL;
    }
  }

  memset(&hdr, 0, sizeof(hdr));
  memcpy(hdr.name, name, sizeof(hdr.name) - 1);
  hdr.max_pages = pages;
  hdr.flags = HDR_FLAG_ALLOCATED | flags;
  write_header(&hdr, page);

  PRINTF("Coffee: Reserved %u pages starting from %u for file %s\n",
      pages, page, name);

  file = load_file(page, &hdr);
  if(file != NULL) {
    file->end = 0;
  }

  return file;
}
/*---------------------------------------------------------------------------*/
#if COFFEE_MICRO_LOGS
static void
adjust_log_config(struct file_header *hdr,
                  uint16_t *log_record_size, uint16_t *log_records)
{
  *log_record_size = hdr->log_record_size == 0 ?
                     COFFEE_PAGE_SIZE : hdr->log_record_size;
  *log_records = hdr->log_records == 0 ?
                     COFFEE_LOG_SIZE / *log_record_size : hdr->log_records;
}
#endif /* COFFEE_MICRO_LOGS */
/*---------------------------------------------------------------------------*/
#if COFFEE_MICRO_LOGS
static uint16_t
modify_log_buffer(uint16_t log_record_size,
                  cfs_offset_t *offset, uint16_t *size)
{
  uint16_t region;

  region = *offset / log_record_size;
  *offset %= log_record_size;

  if(*size > log_record_size - *offset) {
    *size = log_record_size - *offset;
  }

  return region;
}
#endif /* COFFEE_MICRO_LOGS */
/*---------------------------------------------------------------------------*/
#if COFFEE_MICRO_LOGS
static int
get_record_index(coffee_page_t log_page, uint16_t search_records,
                 uint16_t region)
{
  cfs_offset_t base;
  uint16_t processed;
  uint16_t batch_size;
  int16_t match_index, i;

  base = absolute_offset(log_page, sizeof(uint16_t) * search_records);
  batch_size = search_records > COFFEE_LOG_TABLE_LIMIT ?
                COFFEE_LOG_TABLE_LIMIT : search_records;
  processed = 0;
  match_index = -1;

  {
  uint16_t indices[batch_size];

  while(processed < search_records && match_index < 0) {
    if(batch_size + processed > search_records) {
      batch_size = search_records - processed;
    }

    base -= batch_size * sizeof(indices[0]);
    COFFEE_READ(&indices, sizeof(indices[0]) * batch_size, base);

    for(i = batch_size - 1; i >= 0; i--) {
      if(indices[i] - 1 == region) {
        match_index = search_records - processed - (batch_size - i);
        break;
      }
    }

    processed += batch_size;
  }
  }

  return match_index;
}
#endif /* COFFEE_MICRO_LOGS */
/*---------------------------------------------------------------------------*/
#if COFFEE_MICRO_LOGS
static int
read_log_page(struct file_header *hdr, int16_t record_count,
              struct log_param *lp)
{
  uint16_t region;
  int16_t match_index;
  uint16_t log_record_size;
  uint16_t log_records;
  cfs_offset_t base;
  uint16_t search_records;

  adjust_log_config(hdr, &log_record_size, &log_records);
  region = modify_log_buffer(log_record_size, &lp->offset, &lp->size);

  search_records = record_count < 0 ? log_records : record_count;
  match_index = get_record_index(hdr->log_page, search_records, region);
  if(match_index < 0) {
    return -1;
  }

  base = absolute_offset(hdr->log_page, log_records * sizeof(region));
  base += (cfs_offset_t)match_index * log_record_size;
  base += lp->offset;
  COFFEE_READ(lp->buf, lp->size, base);

  return lp->size;
}
#endif /* COFFEE_MICRO_LOGS */
/*---------------------------------------------------------------------------*/
#if COFFEE_MICRO_LOGS
static coffee_page_t
create_log(struct file *file, struct file_header *hdr)
{
  uint16_t log_record_size, log_records;
  cfs_offset_t size;
  struct file *log_file;

  adjust_log_config(hdr, &log_record_size, &log_records);

  /* Log index size + log data size. */
  size = log_records * (sizeof(uint16_t) + log_record_size);

  log_file = reserve(hdr->name, page_count(size), 1, HDR_FLAG_LOG);
  if(log_file == NULL) {
    return INVALID_PAGE;
  }

  hdr->flags |= HDR_FLAG_MODIFIED;
  hdr->log_page = log_file->page;
  write_header(hdr, file->page);

  file->flags |= COFFEE_FILE_MODIFIED;
  return log_file->page;
}
#endif /* COFFEE_MICRO_LOGS */
/*---------------------------------------------------------------------------*/
static int
merge_log(coffee_page_t file_page, int extend)
{
  struct file_header hdr, hdr2;
  int fd, n;
  cfs_offset_t offset;
  coffee_page_t max_pages;
  struct file *new_file;
  int i;

  read_header(&hdr, file_page);

  fd = cfs_open(hdr.name, CFS_READ);
  if(fd < 0) {
    return -1;
  }

  /*
   * The reservation function adds extra space for the header, which has
   * already been calculated with in the previous reservation.
   */
  max_pages = hdr.max_pages << extend;
  new_file = reserve(hdr.name, max_pages, 1, 0);
  if(new_file == NULL) {
    cfs_close(fd);
    return -1;
  }

  offset = 0;
  do {
    char buf[hdr.log_record_size == 0 ? COFFEE_PAGE_SIZE : hdr.log_record_size];
    n = cfs_read(fd, buf, sizeof(buf));
    if(n < 0) {
      remove_by_page(new_file->page, !REMOVE_LOG, !CLOSE_FDS, ALLOW_GC);
      cfs_close(fd);
      return -1;
    } else if(n > 0) {
      COFFEE_WRITE(buf, n, absolute_offset(new_file->page, offset));
      offset += n;
    }
  } while(n != 0);

  for(i = 0; i < COFFEE_FD_SET_SIZE; i++) {
    if(coffee_fd_set[i].flags != COFFEE_FD_FREE && 
       coffee_fd_set[i].file->page == file_page) {
      coffee_fd_set[i].file = new_file;
      new_file->references++;
    }
  }

  if(remove_by_page(file_page, REMOVE_LOG, !CLOSE_FDS, !ALLOW_GC) < 0) {
    remove_by_page(new_file->page, !REMOVE_LOG, !CLOSE_FDS, !ALLOW_GC);
    cfs_close(fd);
    return -1;
  }

  /* Copy the log configuration and the EOF hint. */
  read_header(&hdr2, new_file->page);
  hdr2.log_record_size = hdr.log_record_size;
  hdr2.log_records = hdr.log_records;
  write_header(&hdr2, new_file->page);

  new_file->flags &= ~COFFEE_FILE_MODIFIED;
  new_file->end = offset;

  cfs_close(fd);

  return 0;
}
/*---------------------------------------------------------------------------*/
#if COFFEE_MICRO_LOGS
static int
find_next_record(struct file *file, coffee_page_t log_page,
                int log_records)
{
  int log_record, preferred_batch_size;

  if(file->record_count >= 0) {
    return file->record_count;
  }

  preferred_batch_size = log_records > COFFEE_LOG_TABLE_LIMIT ?
                         COFFEE_LOG_TABLE_LIMIT : log_records;
  {
    /* The next log record is unknown at this point; search for it. */
    uint16_t indices[preferred_batch_size];
    uint16_t processed;
    uint16_t batch_size;

    log_record = log_records;
    for(processed = 0; processed < log_records; processed += batch_size) {
      batch_size = log_records - processed >= preferred_batch_size ?
        preferred_batch_size : log_records - processed;

      COFFEE_READ(&indices, batch_size * sizeof(indices[0]),
                  absolute_offset(log_page, processed * sizeof(indices[0])));
      for(log_record = 0; log_record < batch_size; log_record++) {
        if(indices[log_record] == 0) {
          log_record += processed;
          break;
        }
      }
    }
  }

  return log_record;
}
#endif /* COFFEE_MICRO_LOGS */
/*---------------------------------------------------------------------------*/
#if COFFEE_MICRO_LOGS
static int
write_log_page(struct file *file, struct log_param *lp)
{
  struct file_header hdr;
  uint16_t region;
  coffee_page_t log_page;
  int16_t log_record;
  uint16_t log_record_size;
  uint16_t log_records;
  cfs_offset_t offset;
  struct log_param lp_out;

  read_header(&hdr, file->page);

  adjust_log_config(&hdr, &log_record_size, &log_records);
  region = modify_log_buffer(log_record_size, &lp->offset, &lp->size);

  log_page = 0;
  if(HDR_MODIFIED(hdr)) {
    /* A log structure has already been created. */
    log_page = hdr.log_page;
    log_record = find_next_record(file, log_page, log_records);
    if(log_record >= log_records) {
      /* The log is full; merge the log. */
      PRINTF("Coffee: Merging the file %s with its log\n", hdr.name);
      return merge_log(file->page, 0);
    }
  } else {
    /* Create a log structure. */
    log_page = create_log(file, &hdr);
    if(log_page == INVALID_PAGE) {
      return -1;
    }
    PRINTF("Coffee: Created a log structure for file %s at page %u\n",
        hdr.name, (unsigned)log_page);
    hdr.log_page = log_page;
    log_record = 0;
  }

  {
    char copy_buf[log_record_size];

    lp_out.offset = offset = region * log_record_size;
    lp_out.buf = copy_buf;
    lp_out.size = log_record_size;

    if((lp->offset > 0 || lp->size != log_record_size) &&
        read_log_page(&hdr, log_record, &lp_out) < 0) {
      COFFEE_READ(copy_buf, sizeof(copy_buf),
          absolute_offset(file->page, offset));
    }

    memcpy(&copy_buf[lp->offset], lp->buf, lp->size);

    /*
     * Write the region number in the region index table.
     * The region number is incremented to avoid values of zero.
     */
    offset = absolute_offset(log_page, 0);
    ++region;
    COFFEE_WRITE(&region, sizeof(region),
                 offset + log_record * sizeof(region));

    offset += log_records * sizeof(region);
    COFFEE_WRITE(copy_buf, sizeof(copy_buf),
                 offset + log_record * log_record_size);
    file->record_count = log_record + 1;
  }

  return lp->size;
}
#endif /* COFFEE_MICRO_LOGS */
/*---------------------------------------------------------------------------*/
static int
get_available_fd(void)
{
  int i;

  for(i = 0; i < COFFEE_FD_SET_SIZE; i++) {
    if(coffee_fd_set[i].flags == COFFEE_FD_FREE) {
      return i;
    }
  }
  return -1;
}
/*---------------------------------------------------------------------------*/
int
cfs_open(const char *name, int flags)
{
  int fd;
  struct file_desc *fdp;

  fd = get_available_fd();
  if(fd < 0) {
    PRINTF("Coffee: Failed to allocate a new file descriptor!\n");
    return -1;
  }

  fdp = &coffee_fd_set[fd];
  fdp->flags = 0;

  fdp->file = find_file(name);
  if(fdp->file == NULL) {
    if((flags & (CFS_READ | CFS_WRITE)) == CFS_READ) {
      return -1;
    }
    fdp->file = reserve(name, page_count(COFFEE_DYN_SIZE), 1, 0);
    if(fdp->file == NULL) {
      return -1;
    }
    fdp->file->end = 0;
  } else if(fdp->file->end == UNKNOWN_OFFSET) {
    fdp->file->end = file_end(fdp->file->page);
  }

  fdp->flags |= flags;
  fdp->offset = flags & CFS_APPEND ? fdp->file->end : 0;
  fdp->file->references++;

  return fd;
}
/*---------------------------------------------------------------------------*/
void
cfs_close(int fd)
{
  if(FD_VALID(fd)) {
    coffee_fd_set[fd].flags = COFFEE_FD_FREE;
    coffee_fd_set[fd].file->references--;
    coffee_fd_set[fd].file = NULL;
  }
}
/*---------------------------------------------------------------------------*/
cfs_offset_t
cfs_seek(int fd, cfs_offset_t offset, int whence)
{
  struct file_desc *fdp;
  cfs_offset_t new_offset;

  if(!FD_VALID(fd)) {
    return -1;
  }
  fdp = &coffee_fd_set[fd];

  if(whence == CFS_SEEK_SET) {
    new_offset = offset;
  } else if(whence == CFS_SEEK_END) {
    new_offset = fdp->file->end + offset;
  } else if(whence == CFS_SEEK_CUR) {
    new_offset = fdp->offset + offset;
  } else {
    return (cfs_offset_t)-1;
  }

  if(new_offset < 0 || new_offset > fdp->file->max_pages * COFFEE_PAGE_SIZE) {
    return -1;
  }

  if(fdp->file->end < new_offset) {
    fdp->file->end = new_offset;
  }

  return fdp->offset = new_offset;
}
/*---------------------------------------------------------------------------*/
int
cfs_remove(const char *name)
{
  struct file *file;

  /*
   * Coffee removes files by marking them as obsolete. The space
   * is not guaranteed to be reclaimed immediately, but must be
   * sweeped by the garbage collector. The garbage collector is
   * called once a file reservation request cannot be granted.
   */
  file = find_file(name);
  if(file == NULL) {
    return -1;
  }

  return remove_by_page(file->page, REMOVE_LOG, CLOSE_FDS, ALLOW_GC);
}
/*---------------------------------------------------------------------------*/
int
cfs_read(int fd, void *buf, unsigned size)
{
  struct file_desc *fdp;
  struct file *file;
#if COFFEE_MICRO_LOGS
  struct file_header hdr;
  struct log_param lp;
  unsigned bytes_left;
  int r;
#endif

  if(!(FD_VALID(fd) && FD_READABLE(fd))) {
    return -1;
  }

  fdp = &coffee_fd_set[fd];
  file = fdp->file;
  if(fdp->offset + size > file->end) {
    size = file->end - fdp->offset;
  }

  /* If the file is allocated, read directly in the file. */
  if(!FILE_MODIFIED(file)) {
    COFFEE_READ(buf, size, absolute_offset(file->page, fdp->offset));
    fdp->offset += size;
    return size;
  }

#if COFFEE_MICRO_LOGS
  read_header(&hdr, file->page);

  /*
   * Fill the buffer by copying from the log in first hand, or the
   * ordinary file if the page has no log record.
   */
  for(bytes_left = size; bytes_left > 0; bytes_left -= r) {
    r = -1;

    lp.offset = fdp->offset;
    lp.buf = buf;
    lp.size = bytes_left;
    r = read_log_page(&hdr, file->record_count, &lp);

    /* Read from the original file if we cannot find the data in the log. */
    if(r < 0) {
      COFFEE_READ(buf, lp.size, absolute_offset(file->page, fdp->offset));
      r = lp.size;
    }
    fdp->offset += r;
    buf = (char *)buf + r;
  }
#endif /* COFFEE_MICRO_LOGS */

  return size;
}
/*---------------------------------------------------------------------------*/
int
cfs_write(int fd, const void *buf, unsigned size)
{
  struct file_desc *fdp;
  struct file *file;
#if COFFEE_MICRO_LOGS
  int i;
  struct log_param lp;
  cfs_offset_t bytes_left;
  const char dummy[1] = { 0xff };
#endif

  if(!(FD_VALID(fd) && FD_WRITABLE(fd))) {
    return -1;
  }

  fdp = &coffee_fd_set[fd];
  file = fdp->file;

  /* Attempt to extend the file if we try to write past the end. */
#if COFFEE_IO_SEMANTICS
  if(!(fdp->io_flags & CFS_COFFEE_IO_FIRM_SIZE)) {
#endif
  while(size + fdp->offset + sizeof(struct file_header) >
     (file->max_pages * COFFEE_PAGE_SIZE)) {
    if(merge_log(file->page, 1) < 0) {
      return -1;
    }
    file = fdp->file;
    PRINTF("Extended the file at page %u\n", (unsigned)file->page);
  }
#if COFFEE_IO_SEMANTICS
  }
#endif

#if COFFEE_MICRO_LOGS
#if COFFEE_IO_SEMANTICS
  if(!(fdp->io_flags & CFS_COFFEE_IO_FLASH_AWARE) &&
     (FILE_MODIFIED(file) || fdp->offset < file->end)) {
#else
  if(FILE_MODIFIED(file) || fdp->offset < file->end) {
#endif
    for(bytes_left = size; bytes_left > 0;) {
      lp.offset = fdp->offset;
      lp.buf = buf;
      lp.size = bytes_left;
      i = write_log_page(file, &lp);
      if(i < 0) {
        /* Return -1 if we wrote nothing because the log write failed. */
        if(size == bytes_left) {
          return -1;
        }
        break;
      } else if(i == 0) {
        /* The file was merged with the log. */
        file = fdp->file;
      } else {
        /* A log record was written. */
        bytes_left -= i;
        fdp->offset += i;
        buf = (char *)buf + i;

        /* Update the file end for a potential log merge that might
           occur while writing log records. */
        if(fdp->offset > file->end) {
          file->end = fdp->offset;
        }
      }
    }

    if(fdp->offset > file->end) {
      /* Update the original file's end with a dummy write. */
      COFFEE_WRITE(dummy, 1, absolute_offset(file->page, fdp->offset));
    }
  } else {
#endif /* COFFEE_MICRO_LOGS */
#if COFFEE_APPEND_ONLY
    if(fdp->offset < file->end) {
      return -1;
    }
#endif /* COFFEE_APPEND_ONLY */

    COFFEE_WRITE(buf, size, absolute_offset(file->page, fdp->offset));
    fdp->offset += size;
#if COFFEE_MICRO_LOGS
  }
#endif /* COFFEE_MICRO_LOGS */

  if(fdp->offset > file->end) {
    file->end = fdp->offset;
  }

  return size;
}
/*---------------------------------------------------------------------------*/
int
cfs_opendir(struct cfs_dir *dir, const char *name)
{
  /*
   * Coffee is only guaranteed to support "/" and ".", but it does not 
   * currently enforce this.
   */
  memset(dir->dummy_space, 0, sizeof(coffee_page_t));
  return 0;
}
/*---------------------------------------------------------------------------*/
int
cfs_readdir(struct cfs_dir *dir, struct cfs_dirent *record)
{
  struct file_header hdr;
  coffee_page_t page;

  memcpy(&page, dir->dummy_space, sizeof(coffee_page_t));

  while(page < COFFEE_PAGE_COUNT) {
    read_header(&hdr, page);
    if(HDR_ACTIVE(hdr) && !HDR_LOG(hdr)) {
      coffee_page_t next_page;
      memcpy(record->name, hdr.name, sizeof(record->name));
      record->name[sizeof(record->name) - 1] = '\0';
      record->size = file_end(page);

      next_page = next_file(page, &hdr);
      memcpy(dir->dummy_space, &next_page, sizeof(coffee_page_t));
      return 0;
    }
    page = next_file(page, &hdr);
  }

  return -1;
}
/*---------------------------------------------------------------------------*/
void
cfs_closedir(struct cfs_dir *dir)
{
  return;
}
/*---------------------------------------------------------------------------*/
int
cfs_coffee_reserve(const char *name, cfs_offset_t size)
{
  return reserve(name, page_count(size), 0, 0) == NULL ? -1 : 0;
}
/*---------------------------------------------------------------------------*/
int
cfs_coffee_configure_log(const char *filename, unsigned log_size,
                         unsigned log_record_size)
{
  struct file *file;
  struct file_header hdr;

  if(log_record_size == 0 || log_record_size > COFFEE_PAGE_SIZE ||
     log_size < log_record_size) {
    return -1;
  }

  file = find_file(filename);
  if(file == NULL) {
    return -1;
  }

  read_header(&hdr, file->page);
  if(HDR_MODIFIED(hdr)) {
    /* Too late to customize the log. */
    return -1;
  }

  hdr.log_records = log_size / log_record_size;
  hdr.log_record_size = log_record_size;
  write_header(&hdr, file->page);

  return 0;
}
/*---------------------------------------------------------------------------*/
#if COFFEE_IO_SEMANTICS
int
cfs_coffee_set_io_semantics(int fd, unsigned flags)
{
  if(!FD_VALID(fd)) {
    return -1;
  }

  coffee_fd_set[fd].io_flags |= flags;

  return 0;
}
#endif
/*---------------------------------------------------------------------------*/
int
cfs_coffee_format(void)
{
  unsigned i;

  PRINTF("Coffee: Formatting %u sectors", COFFEE_SECTOR_COUNT);

  *next_free = 0;

  for(i = 0; i < COFFEE_SECTOR_COUNT; i++) {
    COFFEE_ERASE(i);
    PRINTF(".");
  }

  /* Formatting invalidates the file information. */
  memset(&protected_mem, 0, sizeof(protected_mem));

  PRINTF(" done!\n");

  return 0;
}
/*---------------------------------------------------------------------------*/
void *
cfs_coffee_get_protected_mem(unsigned *size)
{
  *size = sizeof(protected_mem);
  return &protected_mem;
}